bcalm:低内存中的压缩de Bruijn图构造

上传者: 42175776 | 上传时间: 2022-05-21 09:48:35 | 文件大小: 142KB | 文件类型: ZIP
平衡计分卡2 BCALM 2是一种生物信息学工具,用于根据测序数据构建压缩的de Bruijn图。 该存储库是BCALM软件的新并行版本。 它使用的是新算法,并使用库实现。 BCALM(版本1)的原始单线程代码仍可在以下位置获得: : 用法 阅读下面的说明进行编译,然后: ./bcalm -in [reads.fa] -kmer-size [kmer_size] -abundance-min [abundance_threshold] 例如 ./bcalm -in reads.fastq -kmer-size 21 -abundance-min 2 重要参数为: -kmer-size [int] k-mer大小,即de Bruijn图的节点长度。 -abundance-min [int] 设置阈值X,在此阈值以下,滤除(严格地)在数据集中少于X次的k-mers; 即通常

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