haslr:快速读取长短序列杂交基因组的快速工具-源码

上传者: 42131628 | 上传时间: 2021-03-08 20:06:08 | 文件大小: 85KB | 文件类型: ZIP
HASLR:长读的快速混合组装 介绍 HASLR是用于长测序读数的快速基因组组装的工具。 HASLR是一种混合工具,这意味着它需要使用同一样品的第三代测序技术(例如PacBio或Oxford Nanopore)生成的长读本以及下一代测序读物(例如Illumina)。 HASLR能够在单个计算节点上组装大型基因组。 我们的实验表明,使用64个CPU线程,它可以在不到10小时的时间内组装CHM1人类数据集。 安装 要求 GCC≥4.8.5 Python3 zlib 依存关系 HASLR依赖于以下将自动安装的工具: 用于共识阅读长篇文章 用于组装短读 用于将短阅读重叠群与长阅读对齐 用于FASTA / Q操作 使用conda 可以使用conda软件包管理器通过bioconda渠道安装HASLR: conda install -c bioconda haslr 从源头建造 git clo

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