methylKit:用于DNA甲基化分析的R包
甲基试剂盒
建置状态
介绍
methylKit是一个软件包，用于DNA甲基化分析和高通量亚硫酸氢盐测序的注释。 该软件包旨在处理及其变体的测序数据，还可以处理靶标捕获方法，例如序列。 此外，methylKit可以处理从Tab-seq或oxBS-seq获得的5hmC的碱基对分辨率数据。 如果提供正确的输入格式，它也可以处理全基因组亚硫酸氢盐测序数据。
当前功能
覆盖率统计
甲基化统计
样本相关和聚类
差异甲基化分析
功能注释和访问器/强制功能
多种可视化选项
区域和平铺窗口分析
（几乎）适当的
直接从对齐文件中读取甲基化调用
批量效果控制
多线程支持（用于更快的差异甲基化计算）
从生物导体包装GenomicRanges对物体施加强制
从通用文本文件中读取甲基化百分比数据
保持最新
您可以订阅我们的googlegroups页面，以获取有关新版本和功能的最新信息（低频率，仅发布更新）
要提问
文件下载
资源详情
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style='color:#111;'> 11.67KB </span>","children":null,"spread":false},{"title":"Vignette_methylKit.bib <span style='color:#111;'> 5.64KB </span>","children":null,"spread":false},{"title":"CITATION <span style='color:#111;'> 831B </span>","children":null,"spread":false},{"title":"methCall.cpp <span style='color:#111;'> 53.85KB </span>","children":null,"spread":false},{"title":"RcppExports.cpp <span style='color:#111;'> 1.73KB </span>","children":null,"spread":false},{"title":"DESCRIPTION <span style='color:#111;'> 2.52KB </span>","children":null,"spread":false},{"title":".gitignore <span style='color:#111;'> 330B </span>","children":null,"spread":false},{"title":".Rapp.history <span style='color:#111;'> 0B </span>","children":null,"spread":false},{"title":"Makevars <span style='color:#111;'> 907B </span>","children":null,"spread":false},{"title":"README.md <span style='color:#111;'> 9.96KB </span>","children":null,"spread":false},{"title":"NAMESPACE <span style='color:#111;'> 4.96KB </span>","children":null,"spread":false},{"title":"NEWS <span style='color:#111;'> 30.74KB </span>","children":null,"spread":false},{"title":"methylKit_logo.png <span style='color:#111;'> 27.15KB </span>","children":null,"spread":false},{"title":"methylDBFunctions.R <span style='color:#111;'> 98.45KB </span>","children":null,"spread":false},{"title":"backbone.R <span style='color:#111;'> 91.93KB </span>","children":null,"spread":false},{"title":"methylDBClasses.R <span style='color:#111;'> 56.98KB </span>","children":null,"spread":false},{"title":"diffMeth.R <span style='color:#111;'> 53.93KB </span>","children":null,"spread":false},{"title":"regionalize.R <span style='color:#111;'> 32.16KB </span>","children":null,"spread":false},{"title":"tabix.functions.R <span style='color:#111;'> 30.47KB </span>","children":null,"spread":false},{"title":"diffMethDSS.R <span style='color:#111;'> 18.56KB </span>","children":null,"spread":false},{"title":"methSeg.R <span style='color:#111;'> 17.35KB </span>","children":null,"spread":false},{"title":"clusterSamples.R <span style='color:#111;'> 17.05KB </span>","children":null,"spread":false},{"title":"batchControl.R <span style='color:#111;'> 13.05KB </span>","children":null,"spread":false},{"title":"bedgraph.R <span style='color:#111;'> 12.66KB </span>","children":null,"spread":false},{"title":"processBismarkAln.R <span style='color:#111;'> 11.26KB </span>","children":null,"spread":false},{"title":"reorganize.R <span style='color:#111;'> 9.85KB </span>","children":null,"spread":false},{"title":"dataSim.R <span style='color:#111;'> 9.29KB </span>","children":null,"spread":false},{"title":"adjustMethylC.R <span style='color:#111;'> 6.68KB </span>","children":null,"spread":false},{"title":"pool.R <span style='color:#111;'> 5.34KB </span>","children":null,"spread":false},{"title":"normalizeCoverage.R <span style='color:#111;'> 4.78KB </span>","children":null,"spread":false},{"title":"test-reorganize.R <span style='color:#111;'> 4.76KB </span>","children":null,"spread":false},{"title":"test-5-processBismarkAln.r <span style='color:#111;'> 4.65KB </span>","children":null,"spread":false},{"title":"test-4-calculateDiffMeth.r <span style='color:#111;'> 4.19KB </span>","children":null,"spread":false},{"title":"test-8-methSeg.r <span style='color:#111;'> 3.83KB </span>","children":null,"spread":false},{"title":"deprecated_defunct.R <span style='color:#111;'> 3.63KB </span>","children":null,"spread":false},{"title":"test-16-loadTabix.r <span style='color:#111;'> 3.58KB </span>","children":null,"spread":false},{"title":"test-getMethylDiff.R <span style='color:#111;'> 3.40KB </span>","children":null,"spread":false},{"title":"test-17-bedgraph.r <span style='color:#111;'> 3.21KB </span>","children":null,"spread":false},{"title":"test-methRead_addon.R <span style='color:#111;'> 2.89KB </span>","children":null,"spread":false},{"title":"test-unite_addon.r <span style='color:#111;'> 2.69KB </span>","children":null,"spread":false},{"title":"test-2-unite.r <span style='color:#111;'> 2.41KB </span>","children":null,"spread":false},{"title":"test-batchControl.R <span style='color:#111;'> 2.36KB </span>","children":null,"spread":false},{"title":"updateMethObject.R <span style='color:#111;'> 2.34KB </span>","children":null,"spread":false},{"title":"test-13-applyTbxByOverlap.r <span style='color:#111;'> 2.19KB </span>","children":null,"spread":false},{"title":"percMethylation.R <span style='color:#111;'> 1.97KB </span>","children":null,"spread":false},{"title":"methylKit.R <span style='color:#111;'> 1.85KB </span>","children":null,"spread":false},{"title":"test-10-readTabix.r <span style='color:#111;'> 1.84KB </span>","children":null,"spread":false},{"title":"test-14-methRawListConstructor.r <span style='color:#111;'> 1.77KB </span>","children":null,"spread":false},{"title":"test-12-selectByOverlap.r <span style='color:#111;'> 1.67KB </span>","children":null,"spread":false},{"title":"test-1-methRead.r <span style='color:#111;'> 1.61KB </span>","children":null,"spread":false},{"title":"test-18-getMethylationStats.r <span style='color:#111;'> 1.56KB </span>","children":null,"spread":false},{"title":"test-11-pool.r <span style='color:#111;'> 1.54KB </span>","children":null,"spread":false},{"title":"test-19-getCoverageStats.r <span style='color:#111;'> 1.54KB </span>","children":null,"spread":false},{"title":"test-6-regionCounts.r <span style='color:#111;'> 1.54KB </span>","children":null,"spread":false},{"title":"test-8-calculateDiffMethDSS.r <span style='color:#111;'> 1.52KB </span>","children":null,"spread":false},{"title":"test-3-clusterSamples.r <span style='color:#111;'> 1.38KB </span>","children":null,"spread":false},{"title":"test-percMethylation.R <span style='color:#111;'> 1.38KB </span>","children":null,"spread":false},{"title":"test-15-adjustMethylC.R <span style='color:#111;'> 1.22KB </span>","children":null,"spread":false},{"title":"document_data.R <span style='color:#111;'> 1.16KB </span>","children":null,"spread":false},{"title":"test-20-normalizeCoverage.r <span style='color:#111;'> 1.09KB </span>","children":null,"spread":false},{"title":"test-diffMethPerChr.R <span style='color:#111;'> 878B </span>","children":null,"spread":false},{"title":"create.data.R <span style='color:#111;'> 667B </span>","children":null,"spread":false},{"title":"test-7-dataSim.r <span style='color:#111;'> 585B </span>","children":null,"spread":false},{"title":"RcppExports.R <span style='color:#111;'> 444B </span>","children":null,"spread":false},{"title":"test-999-tidyUp.r <span style='color:#111;'> 217B </span>","children":null,"spread":false},{"title":"onUnload.R <span style='color:#111;'> 80B </span>","children":null,"spread":false},{"title":"testthat.R <span style='color:#111;'> 64B </span>","children":null,"spread":false},{"title":".Rbuildignore <span style='color:#111;'> 510B </span>","children":null,"spread":false},{"title":"methRead-methods.Rd <span style='color:#111;'> 9.14KB </span>","children":null,"spread":false},{"title":"calculateDiffMeth-methods.Rd <span style='color:#111;'> 8.59KB </span>","children":null,"spread":false},{"title":"regionCounts.Rd <span style='color:#111;'> 7.27KB </span>","children":null,"spread":false},{"title":"processBismarkAln-methods.Rd <span style='color:#111;'> 5.42KB </span>","children":null,"spread":false},{"title":"filterByCoverage-methods.Rd <span style='color:#111;'> 5.05KB </span>","children":null,"spread":false},{"title":"bedgraph-methods.Rd <span style='color:#111;'> 4.98KB </span>","children":null,"spread":false},{"title":"reorganize-methods.Rd <span style='color:#111;'> 4.86KB </span>","children":null,"spread":false},{"title":"adjustMethylC.Rd <span style='color:#111;'> 4.42KB </span>","children":null,"spread":false},{"title":"PCASamples-methods.Rd <span style='color:#111;'> 4.30KB </span>","children":null,"spread":false},{"title":"methSeg.Rd <span style='color:#111;'> 4.22KB </span>","children":null,"spread":false},{"title":"tileMethylCounts-methods.Rd <span style='color:#111;'> 4.22KB </span>","children":null,"spread":false},{"title":"reconstruct-methods.Rd <span style='color:#111;'> 4.19KB </span>","children":null,"spread":false},{"title":"unite-methods.Rd <span style='color:#111;'> 4.06KB </span>","children":null,"spread":false},{"title":"selectByOverlap-methods.Rd <span style='color:#111;'> 3.99KB </span>","children":null,"spread":false},{"title":"dataSim-methods.Rd <span style='color:#111;'> 3.78KB </span>","children":null,"spread":false},{"title":"getMethylDiff-methods.Rd <span style='color:#111;'> 3.69KB </span>","children":null,"spread":false},{"title":"clusterSamples-methods.Rd <span style='color:#111;'> 3.42KB </span>","children":null,"spread":false},{"title":"removeComp-methods.Rd <span style='color:#111;'> 3.38KB </span>","children":null,"spread":false},{"title":"methylBaseDB-class.Rd <span style='color:#111;'> 3.34KB </span>","children":null,"spread":false},{"title":"pool-methods.Rd <span style='color:#111;'> 3.21KB </span>","children":null,"spread":false},{"title":"normalizeCoverage-methods.Rd <span style='color:#111;'> 3.06KB </span>","children":null,"spread":false},{"title":"methylBase-class.Rd <span style='color:#111;'> 2.88KB </span>","children":null,"spread":false},{"title":"methylRawDB-class.Rd <span style='color:#111;'> 2.87KB </span>","children":null,"spread":false},{"title":"methylDiffDB-class.Rd <span style='color:#111;'> 2.48KB </span>","children":null,"spread":false},{"title":"......","children":null,"spread":false},{"title":"<span style='color:steelblue;'>文件过多，未全部展示</span>","children":null,"spread":false}],"spread":true}]
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本站所有资源不代表本站的观点或立场，基于网友分享，根据中国法律《信息网络传播权保护条例》第二十二条之规定，若资源存在侵权或相关问题请联系本站客服人员，zhiweidada#qq.com，请把#换成@，本站将给予最大的支持与配合，做到及时反馈和处理。关于更多版权及免责申明参见 版权及免责申明