[{"title":"( 63 个子文件 426KB ) treetime:带时间戳的系统发育和祖先重建的最大似然推断","children":[{"title":"treetime-master","children":[{"title":".travis.yml <span style='color:#111;'> 634B </span>","children":null,"spread":false},{"title":".readthedocs.yml <span style='color:#111;'> 608B </span>","children":null,"spread":false},{"title":".travis_test.sh <span style='color:#111;'> 162B </span>","children":null,"spread":false},{"title":"changelog.md <span style='color:#111;'> 4.00KB </span>","children":null,"spread":false},{"title":"bin","children":[{"title":"treetime <span style='color:#111;'> 334B </span>","children":null,"spread":false}],"spread":true},{"title":"docs","children":[{"title":"flu_200.png <span style='color:#111;'> 18.13KB </span>","children":null,"spread":false},{"title":"requirements.txt <span style='color:#111;'> 43B </span>","children":null,"spread":false},{"title":"Makefile <span style='color:#111;'> 7.89KB </span>","children":null,"spread":false},{"title":"source","children":[{"title":"vcf_utils.rst <span style='color:#111;'> 138B </span>","children":null,"spread":false},{"title":"seq_utils.rst <span style='color:#111;'> 200B </span>","children":null,"spread":false},{"title":"conf.py <span style='color:#111;'> 9.86KB </span>","children":null,"spread":false},{"title":"commands.rst <span style='color:#111;'> 149B </span>","children":null,"spread":false},{"title":"treetime.rst <span style='color:#111;'> 986B </span>","children":null,"spread":false},{"title":"installation.rst <span style='color:#111;'> 1.77KB </span>","children":null,"spread":false},{"title":"clock_tree.rst <span style='color:#111;'> 986B </span>","children":null,"spread":false},{"title":"seqgen.rst <span style='color:#111;'> 132B </span>","children":null,"spread":false},{"title":"gtr.rst <span style='color:#111;'> 944B </span>","children":null,"spread":false},{"title":"tutorials","children":[{"title":"figures","children":[{"title":"ebola_outliers.png <span style='color:#111;'> 50.75KB </span>","children":null,"spread":false},{"title":"clock_plot.png <span style='color:#111;'> 39.31KB </span>","children":null,"spread":false},{"title":"ebola_skyline.png <span style='color:#111;'> 9.68KB </span>","children":null,"spread":false},{"title":"tree_and_clock.png <span style='color:#111;'> 167.06KB </span>","children":null,"spread":false},{"title":"timetree.png <span style='color:#111;'> 7.11KB </span>","children":null,"spread":false}],"spread":false},{"title":"ancestral.rst <span style='color:#111;'> 2.95KB </span>","children":null,"spread":false},{"title":"timetree.rst <span style='color:#111;'> 5.99KB </span>","children":null,"spread":false},{"title":"homoplasy.rst <span style='color:#111;'> 4.98KB </span>","children":null,"spread":false},{"title":"clock.rst <span style='color:#111;'> 3.21KB </span>","children":null,"spread":false},{"title":"mugration.rst <span style='color:#111;'> 3.29KB </span>","children":null,"spread":false}],"spread":false},{"title":"treeanc.rst <span style='color:#111;'> 2.47KB </span>","children":null,"spread":false},{"title":"tutorials.rst <span style='color:#111;'> 1.02KB </span>","children":null,"spread":false},{"title":"index.rst <span style='color:#111;'> 2.65KB </span>","children":null,"spread":false},{"title":"APIdoc.rst <span style='color:#111;'> 656B </span>","children":null,"spread":false}],"spread":false}],"spread":true},{"title":"treetime","children":[{"title":"seqgen.py <span style='color:#111;'> 3.21KB </span>","children":null,"spread":false},{"title":"gtr_site_specific.py <span style='color:#111;'> 15.68KB </span>","children":null,"spread":false},{"title":"clock_tree.py <span style='color:#111;'> 43.08KB </span>","children":null,"spread":false},{"title":"distribution.py <span style='color:#111;'> 11.05KB </span>","children":null,"spread":false},{"title":"merger_models.py <span style='color:#111;'> 12.29KB </span>","children":null,"spread":false},{"title":"utils.py <span style='color:#111;'> 17.54KB </span>","children":null,"spread":false},{"title":"vcf_utils.py <span style='color:#111;'> 23.81KB </span>","children":null,"spread":false},{"title":"nuc_models.py <span style='color:#111;'> 7.17KB </span>","children":null,"spread":false},{"title":"node_interpolator.py <span style='color:#111;'> 10.20KB </span>","children":null,"spread":false},{"title":"seq_utils.py <span style='color:#111;'> 13.61KB </span>","children":null,"spread":false},{"title":"__init__.py <span style='color:#111;'> 881B </span>","children":null,"spread":false},{"title":"wrappers.py <span style='color:#111;'> 44.24KB </span>","children":null,"spread":false},{"title":"sequence_data.py <span style='color:#111;'> 21.37KB </span>","children":null,"spread":false},{"title":"treetime.py <span style='color:#111;'> 41.79KB </span>","children":null,"spread":false},{"title":"treeregression.py <span style='color:#111;'> 22.19KB </span>","children":null,"spread":false},{"title":"branch_len_interpolator.py <span style='color:#111;'> 7.21KB </span>","children":null,"spread":false},{"title":"config.py <span style='color:#111;'> 976B </span>","children":null,"spread":false},{"title":"treeanc.py <span style='color:#111;'> 67.67KB </span>","children":null,"spread":false},{"title":"argument_parser.py <span style='color:#111;'> 17.43KB </span>","children":null,"spread":false},{"title":"gtr.py <span style='color:#111;'> 35.71KB </span>","children":null,"spread":false},{"title":"aa_models.py <span style='color:#111;'> 4.48KB </span>","children":null,"spread":false}],"spread":false},{"title":".pylintrc <span style='color:#111;'> 1.20KB </span>","children":null,"spread":false},{"title":"test","children":[{"title":"command_line_tests.sh <span style='color:#111;'> 1.92KB </span>","children":null,"spread":false},{"title":"test_treetime.py <span style='color:#111;'> 9.72KB </span>","children":null,"spread":false},{"title":"run_tests.py <span style='color:#111;'> 199B </span>","children":null,"spread":false}],"spread":true},{"title":"benchmarking","children":[{"title":"sequence_algorithms.py <span style='color:#111;'> 789B </span>","children":null,"spread":false},{"title":"timetree_algorithms.py <span style='color:#111;'> 2.71KB </span>","children":null,"spread":false}],"spread":true},{"title":"LICENSE <span style='color:#111;'> 1.07KB </span>","children":null,"spread":false},{"title":"setup.py <span style='color:#111;'> 1.64KB </span>","children":null,"spread":false},{"title":".gitignore <span style='color:#111;'> 1.43KB </span>","children":null,"spread":false},{"title":"README.md <span style='color:#111;'> 12.02KB </span>","children":null,"spread":false},{"title":"contributing.md <span style='color:#111;'> 553B </span>","children":null,"spread":false}],"spread":false}],"spread":true}]