SIMER:生命科学与育种的数据模拟

上传者: 42174098 | 上传时间: 2023-02-22 09:37:04 | 文件大小: 3.17MB | 文件类型: ZIP
R
西蒙 生命科学与育种的数据模拟 作者: 设计和维护, ,,,和。 撰稿人:唐振双,徐静亚,李新云,朱梦津,袁晓慧和赵树红 欢迎提出问题,建议和错误报告: 内容 安装 我们强烈建议在Microsoft R Open上安装SIMER( ) 安装 # the the development version from GitHub: # install.packages("devtools") devtools :: install_github( " xiaolei-lab/SIMER " ) 成功安装后,可以通过键入以下内容加载SIMER > library( simer ) 键入?simer可以获取所有参数的详细信息。 资料准备 基因型 基因型数据应为数字(m行和(2 * n)列,m为SNP数,n为个体数)格式。 如果你在PLINK二进制格式的基因型数据(详见 ),VCF或单体型

文件下载

资源详情

[{"title":"( 79 个子文件 3.17MB ) SIMER:生命科学与育种的数据模拟","children":[{"title":"SIMER-master","children":[{"title":"SIMER.Rproj <span style='color:#111;'> 399B </span>","children":null,"spread":false},{"title":"NAMESPACE <span style='color:#111;'> 1.36KB </span>","children":null,"spread":false},{"title":"DESCRIPTION <span style='color:#111;'> 1.53KB </span>","children":null,"spread":false},{"title":"inst","children":[{"title":"extdata","children":[{"title":"00simer_logo","children":[{"title":"simer_logo.png <span style='color:#111;'> 40.60KB </span>","children":null,"spread":false}],"spread":true},{"title":"01breeding_plan","children":[{"title":"breeding_plan02.txt <span style='color:#111;'> 302B </span>","children":null,"spread":false},{"title":"ReadMe.txt <span style='color:#111;'> 1.05KB </span>","children":null,"spread":false},{"title":"breeding_plan03.txt <span style='color:#111;'> 314B </span>","children":null,"spread":false},{"title":"breeding_plan01.txt <span style='color:#111;'> 304B </span>","children":null,"spread":false}],"spread":true}],"spread":true}],"spread":true},{"title":"R","children":[{"title":"genotype.r <span style='color:#111;'> 12.18KB </span>","children":null,"spread":false},{"title":"reproduces.r <span style='color:#111;'> 24.60KB </span>","children":null,"spread":false},{"title":"simer.Logging.R <span style='color:#111;'> 1.30KB </span>","children":null,"spread":false},{"title":"breeding.R <span style='color:#111;'> 18.33KB </span>","children":null,"spread":false},{"title":"phenotype.r <span style='color:#111;'> 46.06KB </span>","children":null,"spread":false},{"title":"simdata.R <span style='color:#111;'> 1.32KB </span>","children":null,"spread":false},{"title":"zzz.R <span style='color:#111;'> 863B </span>","children":null,"spread":false},{"title":"simer.Utility.R <span style='color:#111;'> 26.94KB </span>","children":null,"spread":false},{"title":"simer.r <span style='color:#111;'> 86.57KB </span>","children":null,"spread":false},{"title":"selects.r <span style='color:#111;'> 22.49KB </span>","children":null,"spread":false}],"spread":true},{"title":".Rbuildignore <span style='color:#111;'> 39B </span>","children":null,"spread":false},{"title":"LICENSE <span style='color:#111;'> 11.29KB </span>","children":null,"spread":false},{"title":"README.md <span style='color:#111;'> 96.37KB </span>","children":null,"spread":false},{"title":"data","children":[{"title":"datalist <span style='color:#111;'> 34B </span>","children":null,"spread":false},{"title":"simdata.rda <span style='color:#111;'> 3.16MB </span>","children":null,"spread":false}],"spread":true},{"title":"man","children":[{"title":"reproduces.Rd <span style='color:#111;'> 1.75KB </span>","children":null,"spread":false},{"title":"getindex.Rd <span style='color:#111;'> 620B </span>","children":null,"spread":false},{"title":"getfam.Rd <span style='color:#111;'> 742B </span>","children":null,"spread":false},{"title":"cal.r.Rd <span style='color:#111;'> 1.02KB </span>","children":null,"spread":false},{"title":"selects.Rd <span style='color:#111;'> 4.45KB </span>","children":null,"spread":false},{"title":"mate.Rd <span style='color:#111;'> 889B </span>","children":null,"spread":false},{"title":"cal.multi.Rd <span style='color:#111;'> 2.58KB </span>","children":null,"spread":false},{"title":"set.pheno.Rd <span style='color:#111;'> 1.88KB </span>","children":null,"spread":false},{"title":"mate.randmate.Rd <span style='color:#111;'> 1.32KB </span>","children":null,"spread":false},{"title":"getsd.Rd <span style='color:#111;'> 720B </span>","children":null,"spread":false},{"title":"build.CV.Rd <span style='color:#111;'> 606B </span>","children":null,"spread":false},{"title":"cal.gnt.Rd <span style='color:#111;'> 1.88KB </span>","children":null,"spread":false},{"title":"remove_bigmatrix.Rd <span style='color:#111;'> 856B </span>","children":null,"spread":false},{"title":"simer.sample.Rd <span style='color:#111;'> 796B </span>","children":null,"spread":false},{"title":"cal.FR.Rd <span style='color:#111;'> 2.05KB </span>","children":null,"spread":false},{"title":"build.cov.Rd <span style='color:#111;'> 898B </span>","children":null,"spread":false},{"title":"mate.clone.Rd <span style='color:#111;'> 1.14KB </span>","children":null,"spread":false},{"title":"write.file.Rd <span style='color:#111;'> 2.76KB </span>","children":null,"spread":false},{"title":"mate.dh.Rd <span style='color:#111;'> 1.14KB </span>","children":null,"spread":false},{"title":"genotype.Rd <span style='color:#111;'> 2.13KB </span>","children":null,"spread":false},{"title":"input.geno.Rd <span style='color:#111;'> 830B </span>","children":null,"spread":false},{"title":"mate.selfpol.Rd <span style='color:#111;'> 1.25KB </span>","children":null,"spread":false},{"title":"format_time.Rd <span style='color:#111;'> 278B </span>","children":null,"spread":false},{"title":"simer.Rd <span style='color:#111;'> 9.18KB </span>","children":null,"spread":false},{"title":"simer.print.Rd <span style='color:#111;'> 657B </span>","children":null,"spread":false},{"title":"sel.idx.Rd <span style='color:#111;'> 755B </span>","children":null,"spread":false},{"title":"getgmt.Rd <span style='color:#111;'> 553B </span>","children":null,"spread":false},{"title":"cal.idx.Rd <span style='color:#111;'> 1.78KB </span>","children":null,"spread":false},{"title":"userped.Rd <span style='color:#111;'> 339B </span>","children":null,"spread":false},{"title":"cal.eff.Rd <span style='color:#111;'> 1.36KB </span>","children":null,"spread":false},{"title":"paste_label.Rd <span style='color:#111;'> 458B </span>","children":null,"spread":false},{"title":"phenotype.Rd <span style='color:#111;'> 5.42KB </span>","children":null,"spread":false},{"title":"print_info.Rd <span style='color:#111;'> 1.66KB </span>","children":null,"spread":false},{"title":"generate.map.Rd <span style='color:#111;'> 570B </span>","children":null,"spread":false},{"title":"mate.randexself.Rd <span style='color:#111;'> 1.38KB </span>","children":null,"spread":false},{"title":"num2num.Rd <span style='color:#111;'> 401B </span>","children":null,"spread":false},{"title":"sel.core.Rd <span style='color:#111;'> 2.35KB </span>","children":null,"spread":false},{"title":"make_line.Rd <span style='color:#111;'> 338B </span>","children":null,"spread":false},{"title":"cal.pheno.Rd <span style='color:#111;'> 1.79KB </span>","children":null,"spread":false},{"title":"rule_wrap.Rd <span style='color:#111;'> 397B </span>","children":null,"spread":false},{"title":"simer.show.file.Rd <span style='color:#111;'> 612B </span>","children":null,"spread":false},{"title":"geno.cvt1.Rd <span style='color:#111;'> 595B </span>","children":null,"spread":false},{"title":"mate.singcro.Rd <span style='color:#111;'> 1.60KB </span>","children":null,"spread":false},{"title":"geno.cvt2.Rd <span style='color:#111;'> 522B </span>","children":null,"spread":false},{"title":"cal.blk.Rd <span style='color:#111;'> 650B </span>","children":null,"spread":false},{"title":"complan.Rd <span style='color:#111;'> 3.87KB </span>","children":null,"spread":false},{"title":"simer.Version.Rd <span style='color:#111;'> 495B </span>","children":null,"spread":false},{"title":"getpop.Rd <span style='color:#111;'> 642B </span>","children":null,"spread":false},{"title":"cal.sing.Rd <span style='color:#111;'> 1.98KB </span>","children":null,"spread":false},{"title":"print_bar.Rd <span style='color:#111;'> 924B </span>","children":null,"spread":false},{"title":"cal.effs.Rd <span style='color:#111;'> 3.57KB </span>","children":null,"spread":false},{"title":"input.map.Rd <span style='color:#111;'> 345B </span>","children":null,"spread":false},{"title":"A.cal.Rd <span style='color:#111;'> 501B </span>","children":null,"spread":false},{"title":"check.map.Rd <span style='color:#111;'> 788B </span>","children":null,"spread":false},{"title":"rawgeno.Rd <span style='color:#111;'> 365B </span>","children":null,"spread":false}],"spread":false},{"title":".gitignore <span style='color:#111;'> 74B </span>","children":null,"spread":false}],"spread":false}],"spread":true}]

评论信息

免责申明

【只为小站】的资源来自网友分享,仅供学习研究,请务必在下载后24小时内给予删除,不得用于其他任何用途,否则后果自负。基于互联网的特殊性,【只为小站】 无法对用户传输的作品、信息、内容的权属或合法性、合规性、真实性、科学性、完整权、有效性等进行实质审查;无论 【只为小站】 经营者是否已进行审查,用户均应自行承担因其传输的作品、信息、内容而可能或已经产生的侵权或权属纠纷等法律责任。
本站所有资源不代表本站的观点或立场,基于网友分享,根据中国法律《信息网络传播权保护条例》第二十二条之规定,若资源存在侵权或相关问题请联系本站客服人员,zhiweidada#qq.com,请把#换成@,本站将给予最大的支持与配合,做到及时反馈和处理。关于更多版权及免责申明参见 版权及免责申明