chewBBACA_tutorial:使用chewBBACA的分步教程以及所有必要的文件和结果-源码

上传者: 42144707 | 上传时间: 2021-07-22 11:33:41 | 文件大小: 37.89MB | 文件类型: ZIP
客观的 本教程的目的是通过提供以下步骤来说明用于创建714个无乳链球菌基因组(存储在NCBI数据库中的32个完整基因组和682个草图基因组程序集)的wgMLST和cgMLST模式的chewBBACA管道的完整工作流程。分步说明并显示获得的输出。 在本示例中使用的有关NCBI基因组的所有信息都位于genomes文件夹内的。 请首先执行以下步骤: 安装chewBBACA。 检查“以获取有关如何的说明。 chewBBACA包括一些物种的败家培训文件,包括无乳链球菌。 您可以在查看可用的培训文件列表。 我们已在此存储库中包含无乳链球菌的培训文件。 将此存储库克隆到您选择的本地文件夹。 要克隆,请运行以下命令: git clone https://github.com/B-UMMI/chewBBACA_tutorial 转到克隆的存储库的顶级目录.../chewBBACA_tutorial

文件下载

资源详情

[{"title":"( 39 个子文件 37.89MB ) chewBBACA_tutorial:使用chewBBACA的分步教程以及所有必要的文件和结果-源码","children":[{"title":"chewBBACA_tutorial-master","children":[{"title":"Streptococcus_agalactiae.trn <span style='color:#111;'> 545.30KB </span>","children":null,"spread":false},{"title":"info.tsv <span style='color:#111;'> 32.84KB </span>","children":null,"spread":false},{"title":"analysis_all","children":[{"title":"cgMLST_25","children":[{"title":"Presence_Abscence.tsv <span style='color:#111;'> 1.63MB </span>","children":null,"spread":false},{"title":"cgMLSTschema.txt <span style='color:#111;'> 13.57KB </span>","children":null,"spread":false},{"title":"mdata_stats.tsv <span style='color:#111;'> 28.74KB </span>","children":null,"spread":false},{"title":"cgMLST.tsv <span style='color:#111;'> 622.97KB </span>","children":null,"spread":false}],"spread":true},{"title":"cgMLST_all.tsv <span style='color:#111;'> 2.00MB </span>","children":null,"spread":false},{"title":"GenomeQualityPlot.html <span style='color:#111;'> 2.31MB </span>","children":null,"spread":false},{"title":"removedGenomes.txt <span style='color:#111;'> 79.59KB </span>","children":null,"spread":false},{"title":"Genes_95%.txt <span style='color:#111;'> 2.16MB </span>","children":null,"spread":false},{"title":"cgMLST_completegenomes","children":[{"title":"Presence_Abscence.tsv <span style='color:#111;'> 290.67KB </span>","children":null,"spread":false},{"title":"cgMLSTschema.txt <span style='color:#111;'> 38.99KB </span>","children":null,"spread":false},{"title":"mdata_stats.tsv <span style='color:#111;'> 1.47KB </span>","children":null,"spread":false},{"title":"cgMLST.tsv <span style='color:#111;'> 121.54KB </span>","children":null,"spread":false}],"spread":true},{"title":"removedGenomes_25.txt <span style='color:#111;'> 2.45KB </span>","children":null,"spread":false}],"spread":true},{"title":"genomes","children":[{"title":"NCBI_genomes_proks.Sagalactiae_allGenomes.2016_08_03.tsv <span style='color:#111;'> 155.29KB </span>","children":null,"spread":false},{"title":"complete_genomes.zip <span style='color:#111;'> 17.50MB </span>","children":null,"spread":false}],"spread":true},{"title":"README.md <span style='color:#111;'> 13.07KB </span>","children":null,"spread":false},{"title":"expected_results","children":[{"title":"Paralog_detection","children":[{"title":"results_alleles_NoParalogs.tsv.tsv <span style='color:#111;'> 436.03KB </span>","children":null,"spread":false}],"spread":true},{"title":"Allele_call_for_682_Streptococcus_agalactiae_assemblies","children":[{"title":"tutorial_schema.zip <span style='color:#111;'> 5.51MB </span>","children":null,"spread":false},{"title":"results680_cgMLST","children":[{"title":"results_20210430T184958","children":[{"title":"results_alleles.tsv <span style='color:#111;'> 1.91MB </span>","children":null,"spread":false},{"title":"results_statistics.tsv <span style='color:#111;'> 38.23KB </span>","children":null,"spread":false},{"title":"results_contigsInfo.tsv <span style='color:#111;'> 23.70MB </span>","children":null,"spread":false},{"title":"RepeatedLoci.txt <span style='color:#111;'> 12B </span>","children":null,"spread":false},{"title":"logging_info.txt <span style='color:#111;'> 174B </span>","children":null,"spread":false}],"spread":true}],"spread":true}],"spread":true},{"title":"cgMLST_schema_determination","children":[{"title":"genome_quality_32","children":[{"title":"GenomeQualityPlot.html <span style='color:#111;'> 3.33MB </span>","children":null,"spread":false},{"title":"removedGenomes.txt <span style='color:#111;'> 2.17KB </span>","children":null,"spread":false},{"title":"Genes_95%.txt <span style='color:#111;'> 1.53MB </span>","children":null,"spread":false}],"spread":true},{"title":"cgMLST_95","children":[{"title":"cgMLSTschema.txt <span style='color:#111;'> 38.91KB </span>","children":null,"spread":false},{"title":"Presence_Absence.tsv <span style='color:#111;'> 290.89KB </span>","children":null,"spread":false},{"title":"mdata_stats.tsv <span style='color:#111;'> 2.01KB </span>","children":null,"spread":false},{"title":"cgMLST.tsv <span style='color:#111;'> 121.77KB </span>","children":null,"spread":false}],"spread":true}],"spread":true},{"title":"Allele_calling","children":[{"title":"tutorial_schema.zip <span style='color:#111;'> 5.70MB </span>","children":null,"spread":false},{"title":"results32_wgMLST","children":[{"title":"results_20210429T125638","children":[{"title":"results_alleles.tsv <span style='color:#111;'> 439.19KB </span>","children":null,"spread":false},{"title":"results_statistics.tsv <span style='color:#111;'> 1.97KB </span>","children":null,"spread":false},{"title":"results_contigsInfo.tsv <span style='color:#111;'> 1.77MB </span>","children":null,"spread":false},{"title":"RepeatedLoci.txt <span style='color:#111;'> 745B </span>","children":null,"spread":false},{"title":"logging_info.txt <span style='color:#111;'> 173B </span>","children":null,"spread":false}],"spread":true}],"spread":true}],"spread":true},{"title":"Schema_creation","children":[{"title":"tutorial_schema.zip <span style='color:#111;'> 4.04MB </span>","children":null,"spread":false}],"spread":true}],"spread":true}],"spread":true}],"spread":true}]

评论信息

免责申明

【只为小站】的资源来自网友分享,仅供学习研究,请务必在下载后24小时内给予删除,不得用于其他任何用途,否则后果自负。基于互联网的特殊性,【只为小站】 无法对用户传输的作品、信息、内容的权属或合法性、合规性、真实性、科学性、完整权、有效性等进行实质审查;无论 【只为小站】 经营者是否已进行审查,用户均应自行承担因其传输的作品、信息、内容而可能或已经产生的侵权或权属纠纷等法律责任。
本站所有资源不代表本站的观点或立场,基于网友分享,根据中国法律《信息网络传播权保护条例》第二十二条之规定,若资源存在侵权或相关问题请联系本站客服人员,zhiweidada#qq.com,请把#换成@,本站将给予最大的支持与配合,做到及时反馈和处理。关于更多版权及免责申明参见 版权及免责申明