siamcat:R包,用于对微生物群落与宿主表型之间的关联进行统计推断

上传者: 42123456 | 上传时间: 2023-02-27 19:53:15 | 文件大小: 12.04MB | 文件类型: ZIP
R
暹罗猫 概述 SIAMCAT是用于对微生物群落与宿主表型之间的关联进行统计推断的管道。 分析微生物组数据的主要目标是确定与环境因素相关的群落组成的变化。 特别地,将人类微生物组组成与诸如疾病等宿主表型联系起来已经成为研究的热点。 为此,迫切需要强大的统计建模和生物标志物提取工具套件。 SIAMCAT提供了支持数据预处理,统计关联测试,统计建模(LASSO Logistic回归)的完整管道,其中包括用于评估和解释这些模型的工具(例如交叉验证,参数选择,ROC分析和诊断模型图)。 SIAMCAT是开发的,是托管的计算微生物组分析工具套件的一部分。 从SIAMCAT开始 安装 为了开始使用SIAMCAT ,您需要从Bioconductor安装它: if ( ! requireNamespace( " BiocManager " , quietly = TRUE )) install

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