panclassif:一种提高TCGA癌分类器性能的方法-源码

上传者: 42110038 | 上传时间: 2021-03-09 19:05:34 | 文件大小: 200KB | 文件类型: ZIP
PanClassif:用于癌癌分类的机器学习分类器管道 这是一个完整的机器学习管道软件包,可用于TCGA癌症RNA-seq基因计数数据。 数据预购 使用TCGA2STAT下载TCGA癌症和正常样本 使用knn-smoothing对上述收集的数据进行平滑处理( ) 功能 featSelect(homepath,cancerpath,normalpath,k) 参量 homepath:(str)您要保存所有生成的文件和文件夹的路径。 癌变路径:(str) 所有癌症的癌症基因表达矩阵所处的路径。 normalpath:(str) 所有癌症的正常基因表达矩阵所处的路径。 k:(int)每个癌症要选择的最重要基因的数量。 (默认值:k = 5)您不能将k设置为小于5 dataProcess(homepath,names,cancerpath,smoothed_cancer,smoothed

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