krakenreports:从kraken输出创建kmer可视化

上传者: 42099176 | 上传时间: 2023-02-08 09:34:25 | 文件大小: 27KB | 文件类型: ZIP
R
krakenreports 如何安装: 创建一个conda环境,然后运行以下命令 sbatch -p NMLResearch -c 1 --mem=4G --wrap="wget -O - https://raw.githubusercontent.com/TheZetner/krakenreports/master/inst/exec/install.sh | bash" 仅在制浆系统上才需要制浆 运行install.sh,它执行以下操作 安装... 来自Bioconda的kraken2 来自r的r-base 来自r的r-base 来自conda-forge的r-essentials 来自conda-forge的r-xml 安装R Packages Remotes(CRAN)和Krakenreports(Github) 将可执行脚本复制到Conda环境的bin /文件夹中

文件下载

资源详情

[{"title":"( 23 个子文件 27KB ) krakenreports:从kraken输出创建kmer可视化","children":[{"title":"krakenreports-master","children":[{"title":".gitignore <span style='color:#111;'> 19B </span>","children":null,"spread":false},{"title":"NAMESPACE <span style='color:#111;'> 288B </span>","children":null,"spread":false},{"title":"images","children":[{"title":"exampleplot.png <span style='color:#111;'> 8.60KB </span>","children":null,"spread":false},{"title":"paired.png <span style='color:#111;'> 7.06KB </span>","children":null,"spread":false}],"spread":true},{"title":"R","children":[{"title":"functions.R <span style='color:#111;'> 7.38KB </span>","children":null,"spread":false}],"spread":true},{"title":".Rbuildignore <span style='color:#111;'> 60B </span>","children":null,"spread":false},{"title":"LICENSE.md <span style='color:#111;'> 1.05KB </span>","children":null,"spread":false},{"title":"man","children":[{"title":"plotSummary.Rd <span style='color:#111;'> 392B </span>","children":null,"spread":false},{"title":"readKmerData.Rd <span style='color:#111;'> 353B </span>","children":null,"spread":false},{"title":"plotKmerCigar.Rd <span style='color:#111;'> 346B </span>","children":null,"spread":false},{"title":"tidyPairedKmerData.Rd <span style='color:#111;'> 535B </span>","children":null,"spread":false},{"title":"tidyKmerData.Rd <span style='color:#111;'> 454B </span>","children":null,"spread":false},{"title":"plotAllKmerCigars.Rd <span style='color:#111;'> 403B </span>","children":null,"spread":false}],"spread":true},{"title":"README.md <span style='color:#111;'> 3.84KB </span>","children":null,"spread":false},{"title":"inst","children":[{"title":"exec","children":[{"title":"install.sh <span style='color:#111;'> 816B </span>","children":null,"spread":false},{"title":"runkraken.sh <span style='color:#111;'> 599B </span>","children":null,"spread":false},{"title":"krakenreports.R <span style='color:#111;'> 3.17KB </span>","children":null,"spread":false},{"title":"run-pairedcompressed-kraken.sh <span style='color:#111;'> 778B </span>","children":null,"spread":false},{"title":"update.sh <span style='color:#111;'> 522B </span>","children":null,"spread":false}],"spread":true},{"title":"extdata","children":[{"title":"mapped.tsv <span style='color:#111;'> 2.88KB </span>","children":null,"spread":false}],"spread":true}],"spread":true},{"title":"krakenreports.Rproj <span style='color:#111;'> 436B </span>","children":null,"spread":false},{"title":".Rhistory <span style='color:#111;'> 18.91KB </span>","children":null,"spread":false},{"title":"DESCRIPTION <span style='color:#111;'> 778B </span>","children":null,"spread":false}],"spread":false}],"spread":true}]

评论信息

免责申明

【只为小站】的资源来自网友分享,仅供学习研究,请务必在下载后24小时内给予删除,不得用于其他任何用途,否则后果自负。基于互联网的特殊性,【只为小站】 无法对用户传输的作品、信息、内容的权属或合法性、合规性、真实性、科学性、完整权、有效性等进行实质审查;无论 【只为小站】 经营者是否已进行审查,用户均应自行承担因其传输的作品、信息、内容而可能或已经产生的侵权或权属纠纷等法律责任。
本站所有资源不代表本站的观点或立场,基于网友分享,根据中国法律《信息网络传播权保护条例》第二十二条之规定,若资源存在侵权或相关问题请联系本站客服人员,zhiweidada#qq.com,请把#换成@,本站将给予最大的支持与配合,做到及时反馈和处理。关于更多版权及免责申明参见 版权及免责申明