scanorama:全景拼接单个单元格数据

上传者: 42169674 | 上传时间: 2023-04-11 03:16:30 | 文件大小: 51KB | 文件类型: ZIP
Scanorama 概述 Scanorama可以批量校正和整合异质scRNA-seq数据集,这在Brian Hie,Bryan Bryson和Bonnie Berger的论文中进行了描述。 该存储库包含Scanorama源代码以及在论文中重现结果所必需的脚本。 Scanorama旨在用于降噪方法下游的scRNA-seq管道,包括用于插补和高度可变的基因过滤的方法。 然后,可以将Scanorama集成和批次校正的结果用作其他工具的输入,以用于scRNA-seq聚类,可视化和分析。 数据草绘工具还可以极大地加快Scanorama集成,如论文并实现。 API示例用法 Scanorama是。 考虑使用此API以便与Scanpy轻松集成。 另外,在顶部的Scanorama源代码中提供了使用基本Scanorama软件包的参数文档。 这是在Python中使用Scanorama的示例用法: #

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