DeepBindToKeras:将DeepBind模型转换为Keras

上传者: 42166105 | 上传时间: 2023-02-17 11:51:22 | 文件大小: 10.75MB | 文件类型: ZIP
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DeepBindToKeras Av在这里。 我编写了将DeepBind模型转换为Keras的代码。 这有点痛苦,但是我对结果感到满意。 一些不错的功能:与原始的DeepBind预测代码一样,如果该模型适用于DNA序列,那么我将自动取正向和反向互补序列的最大值。 我还处理了具有隐藏的完全连接层和平均池的模型的情况(某些RNA模型存在平均池)。 注意事项: Keras要求批次中的所有输入都具有相同的长度(批次之间的输入长度可以不同,但​​是在批次内,长度必须相同)。 因此,我的转换代码要求您指定输入长度。 当输入大小为<= int(conv_filter_length * 1.5)时,输出在数值精度上与DeepBind输出完全相同(我使用DeepBind附带的4个示例序列和4个模型进行了比较) 当输入大小> int(conv_filter_length * 1.5)时,输出是相

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