StochDecomp:用户手册,说明软件包背后的理论,安装说明-开源

上传者: 42151036 | 上传时间: 2021-04-29 22:04:02 | 文件大小: 195KB | 文件类型: ZIP
随机性是细胞水平上生化过程不可缺少的一个方面。 关于噪声如何在生化系统中进入和传播的研究为我们提供了对随机性起源的非凡见解,但总的来说,它们构成了不同理论分析的拼凑而成。 在这里,我们提出了一种灵活且普遍适用的噪声分解工具,该工具使我们能够计算单个React对系统输出总可变性的贡献。 因此,利用该包装,可以量化噪声如何在生化系统中进入和传播。 我们还演示并举例说明了使用JAK-STAT信号通路,有可能直接从实验数据中推断出各个React导致的噪声贡献。 这是第一个允许将噪声分解为由各个React引起的贡献的计算工具。

文件下载

资源详情

[{"title":"( 90 个子文件 195KB ) StochDecomp:用户手册,说明软件包背后的理论,安装说明-开源","children":[{"title":"script_JAKSTAT.m <span style='color:#111;'> 9.21KB </span>","children":null,"spread":false},{"title":"script_JAKSTAT.m~ <span style='color:#111;'> 9.21KB </span>","children":null,"spread":false},{"title":"T1.pdf <span style='color:#111;'> 4.77KB </span>","children":null,"spread":false},{"title":"DENS.txt <span style='color:#111;'> 234.16KB </span>","children":null,"spread":false},{"title":"script_SGPHOSPHORYLATION.m <span style='color:#111;'> 2.30KB </span>","children":null,"spread":false},{"title":"PlotStationaryContrib.m <span style='color:#111;'> 477B </span>","children":null,"spread":false},{"title":"T001.pdf <span style='color:#111;'> 4.92KB </span>","children":null,"spread":false},{"title":"savefunction.m <span style='color:#111;'> 698B </span>","children":null,"spread":false},{"title":"PlotTimeContrib.m <span style='color:#111;'> 463B </span>","children":null,"spread":false},{"title":"script_MICHAELISMENTEN.m <span style='color:#111;'> 1.86KB </span>","children":null,"spread":false},{"title":"CalcContrib.m <span style='color:#111;'> 575B </span>","children":null,"spread":false},{"title":"ChangeNames.m <span style='color:#111;'> 436B </span>","children":null,"spread":false},{"title":"models","children":[{"title":"SGPHOSPHORYLATION","children":[{"title":"SGPHOSPHORYLATION_stoich.txt <span style='color:#111;'> 54B </span>","children":null,"spread":false},{"title":"SGPHOSPHORYLATION_rates.m <span style='color:#111;'> 149B </span>","children":null,"spread":false},{"title":"SGPHOSPHORYLATION.par <span style='color:#111;'> 86B </span>","children":null,"spread":false},{"title":"symbolic","children":[{"title":"SGPHOSPHORYLATION_all6_equations.m <span style='color:#111;'> 544B </span>","children":null,"spread":false},{"title":"SGPHOSPHORYLATION_all5_equations.m <span style='color:#111;'> 544B </span>","children":null,"spread":false},{"title":"SGPHOSPHORYLATION_all_equations.m <span style='color:#111;'> 634B </span>","children":null,"spread":false},{"title":"SGPHOSPHORYLATION_all4_equations.m <span style='color:#111;'> 520B </span>","children":null,"spread":false},{"title":"SGPHOSPHORYLATION_all2_equations.m <span style='color:#111;'> 519B </span>","children":null,"spread":false},{"title":"SGPHOSPHORYLATION_all7_equations.m <span style='color:#111;'> 520B </span>","children":null,"spread":false},{"title":"SGPHOSPHORYLATION_all3_equations.m <span style='color:#111;'> 520B </span>","children":null,"spread":false},{"title":"SGPHOSPHORYLATION_MRE_jacobian.m <span style='color:#111;'> 141B </span>","children":null,"spread":false},{"title":"SGPHOSPHORYLATION_all1_equations.m <span style='color:#111;'> 514B </span>","children":null,"spread":false}],"spread":false}],"spread":true},{"title":"JAKSTAT","children":[{"title":"JAKSTAT.xml <span style='color:#111;'> 12.62KB </span>","children":null,"spread":false},{"title":"JAKSTAT_stimulus.m <span style='color:#111;'> 1.75KB </span>","children":null,"spread":false},{"title":"JAKSTAT_species.txt <span style='color:#111;'> 165B </span>","children":null,"spread":false},{"title":"JAKSTAT.par <span style='color:#111;'> 136B </span>","children":null,"spread":false},{"title":"symbolic","children":[{"title":"JAKSTAT_all7_equations.m <span style='color:#111;'> 15.17KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all13_equations.m <span style='color:#111;'> 15.30KB </span>","children":null,"spread":false},{"title":"JAKSTAT_MRE_jacobian.m <span style='color:#111;'> 2.03KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all6_equations.m <span style='color:#111;'> 15.17KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all10_equations.m <span style='color:#111;'> 15.18KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all12_equations.m <span style='color:#111;'> 15.18KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all4_equations.m <span style='color:#111;'> 15.17KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all2_equations.m <span style='color:#111;'> 15.18KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all3_equations.m <span style='color:#111;'> 15.38KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all5_equations.m <span style='color:#111;'> 15.17KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all15_equations.m <span style='color:#111;'> 15.15KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all14_equations.m <span style='color:#111;'> 15.14KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all1_equations.m <span style='color:#111;'> 15.48KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all9_equations.m <span style='color:#111;'> 15.17KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all_equations.m <span style='color:#111;'> 16.27KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all8_equations.m <span style='color:#111;'> 15.17KB </span>","children":null,"spread":false},{"title":"JAKSTAT_all11_equations.m <span style='color:#111;'> 15.18KB </span>","children":null,"spread":false}],"spread":false},{"title":"JAKSTAT_stoich.txt <span style='color:#111;'> 527B </span>","children":null,"spread":false},{"title":"JAKSTAT_rates.m <span style='color:#111;'> 295B </span>","children":null,"spread":false}],"spread":false},{"title":"MICHAELISMENTEN","children":[{"title":"MICHAELISMENTEN.par <span style='color:#111;'> 57B </span>","children":null,"spread":false},{"title":"MICHAELISMENTEN_rates.m <span style='color:#111;'> 128B </span>","children":null,"spread":false},{"title":"MICHAELISMENTEN_stoich.txt <span style='color:#111;'> 45B </span>","children":null,"spread":false},{"title":"symbolic","children":[{"title":"MICHAELISMENTEN_all2_equations.m <span style='color:#111;'> 1.16KB </span>","children":null,"spread":false},{"title":"MICHAELISMENTEN_all_equations.m <span style='color:#111;'> 1.32KB </span>","children":null,"spread":false},{"title":"MICHAELISMENTEN_MRE_jacobian.m <span style='color:#111;'> 232B </span>","children":null,"spread":false},{"title":"MICHAELISMENTEN_all4_equations.m <span style='color:#111;'> 1.13KB </span>","children":null,"spread":false},{"title":"MICHAELISMENTEN_all5_equations.m <span style='color:#111;'> 1.07KB </span>","children":null,"spread":false},{"title":"MICHAELISMENTEN_all3_equations.m <span style='color:#111;'> 1.13KB </span>","children":null,"spread":false},{"title":"MICHAELISMENTEN_all1_equations.m <span style='color:#111;'> 1.06KB </span>","children":null,"spread":false}],"spread":false}],"spread":false},{"title":"CATALYTIC","children":[{"title":"CATALYTIC.par <span style='color:#111;'> 70B </span>","children":null,"spread":false},{"title":"CATALYTIC_stoich.txt <span style='color:#111;'> 42B </span>","children":null,"spread":false},{"title":"CATALYTIC_rates.m <span style='color:#111;'> 140B </span>","children":null,"spread":false},{"title":"symbolic","children":[{"title":"CATALYTIC_all_equations.m <span style='color:#111;'> 446B </span>","children":null,"spread":false},{"title":"CATALYTIC_all3_equations.m <span style='color:#111;'> 392B </span>","children":null,"spread":false},{"title":"CATALYTIC_all2_equations.m <span style='color:#111;'> 392B </span>","children":null,"spread":false},{"title":"CATALYTIC_MRE_jacobian.m <span style='color:#111;'> 122B </span>","children":null,"spread":false},{"title":"CATALYTIC_all4_equations.m <span style='color:#111;'> 391B </span>","children":null,"spread":false},{"title":"CATALYTIC_all1_equations.m <span style='color:#111;'> 386B </span>","children":null,"spread":false},{"title":"CATALYTIC_all6_equations.m <span style='color:#111;'> 392B </span>","children":null,"spread":false},{"title":"CATALYTIC_all5_equations.m <span style='color:#111;'> 392B </span>","children":null,"spread":false}],"spread":false}],"spread":false},{"title":"CONVERSION","children":[{"title":"CONVERSION.par <span style='color:#111;'> 62B </span>","children":null,"spread":false},{"title":"CONVERSION_rates.m <span style='color:#111;'> 141B </span>","children":null,"spread":false},{"title":"CONVERSION_stoich.txt <span style='color:#111;'> 44B </span>","children":null,"spread":false},{"title":"symbolic","children":[{"title":"CONVERSION_MRE_jacobian.m <span style='color:#111;'> 138B </span>","children":null,"spread":false},{"title":"CONVERSION_all6_equations.m <span style='color:#111;'> 470B </span>","children":null,"spread":false},{"title":"CONVERSION_all3_equations.m <span style='color:#111;'> 494B </span>","children":null,"spread":false},{"title":"CONVERSION_all_equations.m <span style='color:#111;'> 572B </span>","children":null,"spread":false},{"title":"CONVERSION_all4_equations.m <span style='color:#111;'> 469B </span>","children":null,"spread":false},{"title":"CONVERSION_all1_equations.m <span style='color:#111;'> 464B </span>","children":null,"spread":false},{"title":"CONVERSION_all5_equations.m <span style='color:#111;'> 470B </span>","children":null,"spread":false},{"title":"CONVERSION_all2_equations.m <span style='color:#111;'> 493B </span>","children":null,"spread":false}],"spread":false}],"spread":false}],"spread":true},{"title":"NoExt.pdf <span style='color:#111;'> 4.76KB </span>","children":null,"spread":false},{"title":"PlotTimeContrib1.m <span style='color:#111;'> 512B </span>","children":null,"spread":false},{"title":"script_CATALYTIC.m <span style='color:#111;'> 1.56KB </span>","children":null,"spread":false},{"title":"plotbar.m <span style='color:#111;'> 131B </span>","children":null,"spread":false},{"title":"posterior.txt <span style='color:#111;'> 110.24KB </span>","children":null,"spread":false},{"title":"createSBML.m <span style='color:#111;'> 2.99KB </span>","children":null,"spread":false},{"title":"script_CONVERSION.m <span style='color:#111;'> 1.49KB </span>","children":null,"spread":false},{"title":"createStochDecomp.m <span style='color:#111;'> 6.14KB </span>","children":null,"spread":false},{"title":"CalcContrib_i.m <span style='color:#111;'> 832B </span>","children":null,"spread":false},{"title":"substitution.m <span style='color:#111;'> 521B </span>","children":null,"spread":false},{"title":"T01.pdf <span style='color:#111;'> 4.82KB </span>","children":null,"spread":false}],"spread":true}]

评论信息

免责申明

【只为小站】的资源来自网友分享,仅供学习研究,请务必在下载后24小时内给予删除,不得用于其他任何用途,否则后果自负。基于互联网的特殊性,【只为小站】 无法对用户传输的作品、信息、内容的权属或合法性、合规性、真实性、科学性、完整权、有效性等进行实质审查;无论 【只为小站】 经营者是否已进行审查,用户均应自行承担因其传输的作品、信息、内容而可能或已经产生的侵权或权属纠纷等法律责任。
本站所有资源不代表本站的观点或立场,基于网友分享,根据中国法律《信息网络传播权保护条例》第二十二条之规定,若资源存在侵权或相关问题请联系本站客服人员,zhiweidada#qq.com,请把#换成@,本站将给予最大的支持与配合,做到及时反馈和处理。关于更多版权及免责申明参见 版权及免责申明