HistoQC:HistoQC是用于数字病理切片的开源质量控制工具

上传者: 42136365 | 上传时间: 2023-05-04 10:39:41 | 文件大小: 8.02MB | 文件类型: ZIP
组织质量控制 HistoQC是用于数字病理切片的开源质量控制工具 要求 经过Python 3.6测试 要求: 滑坡 以及以下其他python包: python-openslide matplotlib 麻木 科学的 skimage 斯克莱恩 您可能可以使用类似(请注意python 3+要求)的方式安装python要求: pip3 install -r requirements.txt 库版本已与当前验证的版本挂钩。 更高版本可能会起作用,但可能无法实现跨站点/版本的可重复性(通常在质量控制中是一件坏事)。 Openslide二进制文件将必须根据单独的操作系统说明进行单独安装 可以使用随附的(7行)Dockerfile创建最基本的Docker映像。 基本用法 C:\Research\code\qc>python qc_pipeline.py --help usage: qc_

文件下载

资源详情

[{"title":"( 89 个子文件 8.02MB ) HistoQC:HistoQC是用于数字病理切片的开源质量控制工具","children":[{"title":"HistoQC-master","children":[{"title":"pen","children":[{"title":"1k_version","children":[{"title":"pen_green.png <span style='color:#111;'> 1.11MB </span>","children":null,"spread":false},{"title":"pen_green_mask.png <span style='color:#111;'> 2.75KB </span>","children":null,"spread":false},{"title":"red_mask.png <span style='color:#111;'> 116B </span>","children":null,"spread":false},{"title":"pen_red.png <span style='color:#111;'> 1.28MB </span>","children":null,"spread":false},{"title":"pen_red_mask_back.png <span style='color:#111;'> 275.39KB </span>","children":null,"spread":false},{"title":"pen_red_mask.png <span style='color:#111;'> 3.76KB </span>","children":null,"spread":false}],"spread":true}],"spread":true},{"title":"Dockerfile <span style='color:#111;'> 864B </span>","children":null,"spread":false},{"title":"CodeOfConduct.md <span style='color:#111;'> 5.07KB </span>","children":null,"spread":false},{"title":"BlurDetectionModule.py <span style='color:#111;'> 1.92KB </span>","children":null,"spread":false},{"title":"ContributingGuidelines.md <span style='color:#111;'> 3.68KB </span>","children":null,"spread":false},{"title":"ClassificationModule.py <span style='color:#111;'> 8.67KB </span>","children":null,"spread":false},{"title":"templates","children":[{"title":"template1.png <span style='color:#111;'> 566.03KB </span>","children":null,"spread":false},{"title":"template3.png <span style='color:#111;'> 581.41KB </span>","children":null,"spread":false},{"title":"template2.png <span style='color:#111;'> 553.77KB </span>","children":null,"spread":false},{"title":"template4.png <span style='color:#111;'> 574.50KB </span>","children":null,"spread":false}],"spread":true},{"title":"requirements.txt <span style='color:#111;'> 111B </span>","children":null,"spread":false},{"title":"BrightContrastModule.py <span style='color:#111;'> 3.10KB </span>","children":null,"spread":false},{"title":"config_light.ini <span style='color:#111;'> 4.28KB </span>","children":null,"spread":false},{"title":"models","children":[{"title":"pen_markings_he","children":[{"title":"pen_green.png <span style='color:#111;'> 90.41KB </span>","children":null,"spread":false},{"title":"pen_green_mask.png <span style='color:#111;'> 712B </span>","children":null,"spread":false},{"title":"pen_red.png <span style='color:#111;'> 356.04KB </span>","children":null,"spread":false},{"title":"pen_red_mask.png <span style='color:#111;'> 1.62KB </span>","children":null,"spread":false},{"title":"he.tsv <span style='color:#111;'> 344B </span>","children":null,"spread":false}],"spread":true},{"title":"coverslip_edge_he","children":[{"title":"coverslip_edge_mask.png <span style='color:#111;'> 2.93KB </span>","children":null,"spread":false},{"title":"coverslip_edge.png <span style='color:#111;'> 1.07MB </span>","children":null,"spread":false}],"spread":true}],"spread":true},{"title":"BaseImage.py <span style='color:#111;'> 6.77KB </span>","children":null,"spread":false},{"title":"DeconvolutionModule.py <span style='color:#111;'> 2.59KB </span>","children":null,"spread":false},{"title":"libopenslide-0.dll <span style='color:#111;'> 182.52KB </span>","children":null,"spread":false},{"title":"config.ini <span style='color:#111;'> 4.51KB </span>","children":null,"spread":false},{"title":"LICENSE.txt <span style='color:#111;'> 1.65KB </span>","children":null,"spread":false},{"title":"qc_pipeline.py <span style='color:#111;'> 10.25KB </span>","children":null,"spread":false},{"title":"Readme.md <span style='color:#111;'> 3.91KB </span>","children":null,"spread":false},{"title":"AnnotationModule","children":[{"title":"config_example_GeoJSON.ini <span style='color:#111;'> 1006B </span>","children":null,"spread":false},{"title":"TCGA-EJ-5518-01Z-00-DX1.xml <span style='color:#111;'> 139.14KB </span>","children":null,"spread":false},{"title":"config_example_XML.ini <span style='color:#111;'> 833B </span>","children":null,"spread":false},{"title":"geojson_example.json <span style='color:#111;'> 89.99KB </span>","children":null,"spread":false}],"spread":false},{"title":"HistogramModule.py <span style='color:#111;'> 2.68KB </span>","children":null,"spread":false},{"title":"SaveModule.py <span style='color:#111;'> 1.48KB </span>","children":null,"spread":false},{"title":"UserInterface","children":[{"title":"css","children":[{"title":"index.css <span style='color:#111;'> 8.60KB </span>","children":null,"spread":false}],"spread":false},{"title":"libs","children":[{"title":"jquery-1.12.4","children":[{"title":"jquery.min.js <span style='color:#111;'> 94.89KB </span>","children":null,"spread":false},{"title":".DS_Store <span style='color:#111;'> 6.00KB </span>","children":null,"spread":false}],"spread":false},{"title":"bootstrap","children":[{"title":"js","children":[{"title":"bootstrap-select.min.js <span style='color:#111;'> 51.02KB </span>","children":null,"spread":false},{"title":"popper.min.js <span style='color:#111;'> 20.01KB </span>","children":null,"spread":false},{"title":"bootstrap.bundle.min.js <span style='color:#111;'> 66.15KB </span>","children":null,"spread":false},{"title":"bootstrap.min.js <span style='color:#111;'> 47.80KB </span>","children":null,"spread":false}],"spread":false},{"title":"css","children":[{"title":"bootstrap-select.min.css <span style='color:#111;'> 10.86KB </span>","children":null,"spread":false},{"title":"bootstrap.css <span style='color:#111;'> 173.98KB </span>","children":null,"spread":false},{"title":"bootstrap.min.css <span style='color:#111;'> 141.48KB </span>","children":null,"spread":false},{"title":"bootstrap-reboot.min.css <span style='color:#111;'> 3.84KB </span>","children":null,"spread":false},{"title":"bootstrap-grid.min.css <span style='color:#111;'> 33.44KB </span>","children":null,"spread":false}],"spread":false}],"spread":false},{"title":"DataTables","children":[{"title":"datatables.min.js <span style='color:#111;'> 2.19MB </span>","children":null,"spread":false},{"title":".DS_Store <span style='color:#111;'> 6.00KB </span>","children":null,"spread":false},{"title":"datatables.min.css <span style='color:#111;'> 20.32KB </span>","children":null,"spread":false},{"title":"dataTables.cellEdit.js <span style='color:#111;'> 10.29KB </span>","children":null,"spread":false},{"title":"dataTables.bootstrap4.min.js <span style='color:#111;'> 2.02KB </span>","children":null,"spread":false},{"title":"dataTables.bootstrap4.min.css <span style='color:#111;'> 4.92KB </span>","children":null,"spread":false}],"spread":false},{"title":"d3-3.5.17","children":[{"title":"LICENSE <span style='color:#111;'> 1.40KB </span>","children":null,"spread":false},{"title":".DS_Store <span style='color:#111;'> 6.00KB </span>","children":null,"spread":false},{"title":"d3.min.js <span style='color:#111;'> 148.17KB </span>","children":null,"spread":false}],"spread":false},{"title":"d3-tip-master","children":[{"title":".gitignore <span style='color:#111;'> 64B </span>","children":null,"spread":false},{"title":".eslintrc.yaml <span style='color:#111;'> 1.04KB </span>","children":null,"spread":false},{"title":"LICENSE <span style='color:#111;'> 1.05KB </span>","children":null,"spread":false},{"title":".DS_Store <span style='color:#111;'> 6.00KB </span>","children":null,"spread":false},{"title":"index.js <span style='color:#111;'> 9.25KB </span>","children":null,"spread":false},{"title":".editorconfig <span style='color:#111;'> 266B </span>","children":null,"spread":false}],"spread":false},{"title":"d3-lasso","children":[{"title":"lasso.min.js <span style='color:#111;'> 4.34KB </span>","children":null,"spread":false}],"spread":false},{"title":"font-awesome","children":[{"title":"fontawesome-all.min.js <span style='color:#111;'> 683.74KB </span>","children":null,"spread":false}],"spread":false},{"title":"umap-js","children":[{"title":"umap-js.min.js <span style='color:#111;'> 76.79KB </span>","children":null,"spread":false}],"spread":false}],"spread":false},{"title":"scripts","children":[{"title":"parallel_chart.js <span style='color:#111;'> 7.16KB </span>","children":null,"spread":false},{"title":"table_init.js <span style='color:#111;'> 4.40KB </span>","children":null,"spread":false},{"title":"image_init.js <span style='color:#111;'> 7.34KB </span>","children":null,"spread":false},{"title":"data_load.js <span style='color:#111;'> 6.74KB </span>","children":null,"spread":false},{"title":"select_mode.js <span style='color:#111;'> 750B </span>","children":null,"spread":false},{"title":"global_config.js <span style='color:#111;'> 2.84KB </span>","children":null,"spread":false},{"title":"index.js <span style='color:#111;'> 6.18KB </span>","children":null,"spread":false},{"title":"scatter_chart.js <span style='color:#111;'> 11.82KB </span>","children":null,"spread":false},{"title":"chart_init.js <span style='color:#111;'> 3.81KB </span>","children":null,"spread":false},{"title":"bar_chart.js <span style='color:#111;'> 7.96KB </span>","children":null,"spread":false},{"title":"global_vars.js <span style='color:#111;'> 2.69KB </span>","children":null,"spread":false},{"title":"multi_select_mode.js <span style='color:#111;'> 1.21KB </span>","children":null,"spread":false}],"spread":false},{"title":"index.html <span style='color:#111;'> 7.32KB </span>","children":null,"spread":false},{"title":"Data","children":[{"title":".gitignore <span style='color:#111;'> 72B </span>","children":null,"spread":false}],"spread":false}],"spread":false},{"title":"LightDarkModule.py <span style='color:#111;'> 3.50KB </span>","children":null,"spread":false},{"title":"MorphologyModule.py <span style='color:#111;'> 4.59KB </span>","children":null,"spread":false},{"title":"config_first.ini <span style='color:#111;'> 1.67KB </span>","children":null,"spread":false},{"title":"BasicModule.py <span style='color:#111;'> 3.11KB </span>","children":null,"spread":false},{"title":"BubbleRegionByRegion.py <span style='color:#111;'> 4.80KB </span>","children":null,"spread":false},{"title":"config_clinical.ini <span style='color:#111;'> 4.54KB </span>","children":null,"spread":false},{"title":"AnnotationModule.py <span style='color:#111;'> 6.80KB </span>","children":null,"spread":false}],"spread":false}],"spread":true}]

评论信息

免责申明

【只为小站】的资源来自网友分享,仅供学习研究,请务必在下载后24小时内给予删除,不得用于其他任何用途,否则后果自负。基于互联网的特殊性,【只为小站】 无法对用户传输的作品、信息、内容的权属或合法性、合规性、真实性、科学性、完整权、有效性等进行实质审查;无论 【只为小站】 经营者是否已进行审查,用户均应自行承担因其传输的作品、信息、内容而可能或已经产生的侵权或权属纠纷等法律责任。
本站所有资源不代表本站的观点或立场,基于网友分享,根据中国法律《信息网络传播权保护条例》第二十二条之规定,若资源存在侵权或相关问题请联系本站客服人员,zhiweidada#qq.com,请把#换成@,本站将给予最大的支持与配合,做到及时反馈和处理。关于更多版权及免责申明参见 版权及免责申明