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SpiecEasi:生态联系的稀疏逆协方差估计和统计推断

上传者： 42135073 | 上传时间： 2022-05-02 10:21:50 | 文件大小： 1.48MB | 文件类型： ZIP
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SpiecEasi 生态联系的稀疏逆协方差估计和统计推断 该软件包对于希望为各种组成数据推断图形模型的人很有用，尽管它主要用于微生物组相对丰度数据（由16S扩增子序列数据生成）。 它还包括一个用于[过度分散，零膨胀]多元相关计数数据的生成器。 请参阅发表的论文。 关于符号的一个小问题：我们将该方法称为“ SPIEC-EASI”，并为此包保留了“ SpiecEasi”。 目录 安装 开发工具 我假设所有辅助软件包都已安装-例如pulsar，large，MASS等。如果遇到意外错误，则可能需要下载并安装缺少的依赖项。 在交互式R会话中： library(devtools) install_github("zdk123/SpiecEasi") library(SpiecEasi) conda SpiecEasi也可以通过conda来源获得，并且应该始终与该存储库的主分支保持最新。 co

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