differential-dropout-analysis:差异缺失分析可捕获单细胞RNA测序数据中的生物学变异

上传者: 42133861 | 上传时间: 2022-10-30 15:38:22 | 文件大小: 96.15MB | 文件类型: ZIP
差异缺失分析 差异缺失分析可捕获单细胞RNA测序数据中的生物学变异 单细胞RNA测序数据的特征是具有大量的零计数,但是越来越多的证据表明这些零反映了生物变异而不是技术伪像。 我们提出了差异缺失分析(DDA),以鉴定单细胞RNA测序数据中生物变异的影响。 使用16个公开可用的模拟数据集,我们显示DDA可以准确地检测生物变异,并且可以比依赖计数的方法更可靠地评估转录本的相对丰度。 可从获得DDA。 可以在此处找到相关手稿图形的脚本,功能和源数据。 此外,从原始数据矩阵中的Seurat对象开始,描述了DDA的两个小插曲 可以在bioRxiv上找到手稿的预印本: ://doi.org/10.1101/2021.02.01.42929187 可以在一个闪亮的应用程序中交互式地浏览结果: : :

文件下载

资源详情

[{"title":"( 58 个子文件 96.15MB ) differential-dropout-analysis:差异缺失分析可捕获单细胞RNA测序数据中的生物学变异","children":[{"title":"differential-dropout-analysis-main","children":[{"title":"002 Data","children":[{"title":"Extreme_DDG_DEG_only_examples","children":[{"title":"mouseDroplet_Gnb2l1.rds <span style='color:#111;'> 1.08MB </span>","children":null,"spread":false},{"title":"cortex_neurons_MTUS2.rds <span style='color:#111;'> 127.69KB </span>","children":null,"spread":false}],"spread":true},{"title":"Summary","children":[{"title":"substantiaNigra.rds <span style='color:#111;'> 2.59MB </span>","children":null,"spread":false},{"title":"T2D.rds <span style='color:#111;'> 2.32MB </span>","children":null,"spread":false},{"title":"mouseFACS.rds <span style='color:#111;'> 2.05MB </span>","children":null,"spread":false},{"title":"cortexNeurons.rds <span style='color:#111;'> 2.83MB </span>","children":null,"spread":false},{"title":"AD.rds <span style='color:#111;'> 1.06MB </span>","children":null,"spread":false},{"title":"MTG.rds <span style='color:#111;'> 3.97MB </span>","children":null,"spread":false},{"title":"colorectal.rds <span style='color:#111;'> 2.42MB </span>","children":null,"spread":false},{"title":"cortexOligo.rds <span style='color:#111;'> 2.31MB </span>","children":null,"spread":false},{"title":"fourcancers.rds <span style='color:#111;'> 2.23MB </span>","children":null,"spread":false},{"title":"MDD.rds <span style='color:#111;'> 2.83MB </span>","children":null,"spread":false},{"title":"COVID.rds <span style='color:#111;'> 2.29MB </span>","children":null,"spread":false},{"title":"cancerAtlas_Regulatory_vs_helper_tcells.rds <span style='color:#111;'> 4.81MB </span>","children":null,"spread":false},{"title":"MetastasisLN.rds <span style='color:#111;'> 2.35MB </span>","children":null,"spread":false},{"title":"mouseDroplet.rds <span style='color:#111;'> 2.09MB </span>","children":null,"spread":false},{"title":"MetastasisLung.rds <span style='color:#111;'> 2.50MB </span>","children":null,"spread":false},{"title":"cancerAtlas_naive_vs_transitional_tcells.rds <span style='color:#111;'> 4.55MB </span>","children":null,"spread":false}],"spread":false},{"title":"Bulk","children":[{"title":"6234_GSE36980_expmat.data.txt <span style='color:#111;'> 31.37MB </span>","children":null,"spread":false},{"title":"15650_GSE95587_expmat.data.txt <span style='color:#111;'> 69.56MB </span>","children":null,"spread":false}],"spread":true}],"spread":true},{"title":"004 Vignette","children":[{"title":"Seurat-example.html <span style='color:#111;'> 771.25KB </span>","children":null,"spread":false},{"title":"Raw example.Rmd <span style='color:#111;'> 4.54KB </span>","children":null,"spread":false},{"title":"Seurat example.Rmd <span style='color:#111;'> 4.57KB </span>","children":null,"spread":false},{"title":"Raw-example.html <span style='color:#111;'> 769.01KB </span>","children":null,"spread":false}],"spread":true},{"title":"003 Results","children":[{"title":"Bulk_Hokama_DEA.rds <span style='color:#111;'> 35.30KB </span>","children":null,"spread":false},{"title":"completeStats_fig1a3.rds <span style='color:#111;'> 1.39KB </span>","children":null,"spread":false},{"title":"DDA_different_binary_thresholds.rds <span style='color:#111;'> 1.07MB </span>","children":null,"spread":false},{"title":"completeStats_fig1a2.rds <span style='color:#111;'> 1.40KB </span>","children":null,"spread":false},{"title":"timing_res.rds <span style='color:#111;'> 730B </span>","children":null,"spread":false},{"title":"logOR_logFC_linear_association.rds <span style='color:#111;'> 610B </span>","children":null,"spread":false},{"title":"DDA_DEA_results_all_datasets.rds <span style='color:#111;'> 8.40MB </span>","children":null,"spread":false},{"title":"simulations_results.rds <span style='color:#111;'> 4.34KB </span>","children":null,"spread":false},{"title":"completeStats_fig1a.rds <span style='color:#111;'> 1.53KB </span>","children":null,"spread":false},{"title":"Bulk_Friedman_DEA.rds <span style='color:#111;'> 43.48KB </span>","children":null,"spread":false}],"spread":true},{"title":"001 Scripts","children":[{"title":"Dataset preparations","children":[{"title":"MDD_set.R <span style='color:#111;'> 1.38KB </span>","children":null,"spread":false},{"title":"colorectalCancer.r <span style='color:#111;'> 1.07KB </span>","children":null,"spread":false},{"title":"Allen_MTG_neurons.r <span style='color:#111;'> 905B </span>","children":null,"spread":false},{"title":"T2D_set.R <span style='color:#111;'> 964B </span>","children":null,"spread":false},{"title":"aging_mouse_droplet.R <span style='color:#111;'> 757B </span>","children":null,"spread":false},{"title":"Four_cancers.r <span style='color:#111;'> 1.95KB </span>","children":null,"spread":false},{"title":"aging_mouse_facs.R <span style='color:#111;'> 1005B </span>","children":null,"spread":false},{"title":"AD_set.R <span style='color:#111;'> 701B </span>","children":null,"spread":false},{"title":"cortex_substatiaNigra.r <span style='color:#111;'> 2.68KB </span>","children":null,"spread":false},{"title":"cancerAtlas.r <span style='color:#111;'> 1.72KB </span>","children":null,"spread":false},{"title":"COVID set.R <span style='color:#111;'> 699B </span>","children":null,"spread":false},{"title":"metastasis.R <span style='color:#111;'> 1.73KB </span>","children":null,"spread":false}],"spread":false},{"title":"Analyses.Rmd <span style='color:#111;'> 9.78KB </span>","children":null,"spread":false},{"title":"Run_tests_on_processed_dataset.R <span style='color:#111;'> 1.60KB </span>","children":null,"spread":false},{"title":"DDs_function_parallel.R <span style='color:#111;'> 1.59KB </span>","children":null,"spread":false},{"title":"DEGs_function_parallel.R <span style='color:#111;'> 2.51KB </span>","children":null,"spread":false},{"title":"DDs_function.R <span style='color:#111;'> 1.98KB </span>","children":null,"spread":false},{"title":"generateDataIndepth.R <span style='color:#111;'> 2.07KB </span>","children":null,"spread":false},{"title":"dataset_and_results_summary stats.R <span style='color:#111;'> 3.14KB </span>","children":null,"spread":false},{"title":".Rhistory <span style='color:#111;'> 8B </span>","children":null,"spread":false},{"title":"Simulations.R <span style='color:#111;'> 8.55KB </span>","children":null,"spread":false},{"title":"runningTimes.R <span style='color:#111;'> 2.58KB </span>","children":null,"spread":false},{"title":"DEGs_function.R <span style='color:#111;'> 1.21KB </span>","children":null,"spread":false}],"spread":false},{"title":"README.md <span style='color:#111;'> 1.13KB </span>","children":null,"spread":false}],"spread":true}],"spread":true}]

评论信息

免责申明

【只为小站】的资源来自网友分享,仅供学习研究,请务必在下载后24小时内给予删除,不得用于其他任何用途,否则后果自负。基于互联网的特殊性,【只为小站】 无法对用户传输的作品、信息、内容的权属或合法性、合规性、真实性、科学性、完整权、有效性等进行实质审查;无论 【只为小站】 经营者是否已进行审查,用户均应自行承担因其传输的作品、信息、内容而可能或已经产生的侵权或权属纠纷等法律责任。
本站所有资源不代表本站的观点或立场,基于网友分享,根据中国法律《信息网络传播权保护条例》第二十二条之规定,若资源存在侵权或相关问题请联系本站客服人员,zhiweidada#qq.com,请把#换成@,本站将给予最大的支持与配合,做到及时反馈和处理。关于更多版权及免责申明参见 版权及免责申明