ChIP-seq-analysis:明堂的ChIP-seq分析笔记
芯片序列分析
Snakemake管道
我开发了一个基于Snakemake的ChIP-seq管道： 。 和ATACseq管道：
ChIP-seq的资源
： ：来自ENCODE的元数据的汇编。 一个bioc包，用于访问ENCODE的元数据并下载原始文件。
论文：
。 序列为.sra格式，需要使用sratools转储到fastq中。
。 序列以fastq格式提供。
用于核小体定位和TF ChIP-seq的工具和论文的集合
评论文章：解密ENCODE
EpiFactors是一个表观遗传因子，相应的基因和产物的数据库。
生物明星手册。 我的ChIP-seq章节将于2017年4月发布！
ReMap 2018对法规区域的综合ChIP-seq分析。 ReMap地图集包含来自公共数据集的485个转录因子（TF），转录共激活因子（TCA）和染色质重塑因子（CRF）的8000万个峰。 可以浏览或
文件下载
资源详情
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