biovec:代表生物序列的新方法

上传者: 42128393 | 上传时间: 2023-04-14 22:02:45 | 文件大小: 7.01MB | 文件类型: ZIP
BioVec 代表生物序列的新方法。 该算法来自本文:“ ” 安装 克隆后在本地安装。 快速开始 import biovec pv = biovec.models.ProtVec("some_fasta_file.fasta", corpus_fname="output_corpusfile_path.txt", n=3) # The n-gram "QAT" should be trained in advance pv["QAT"] # convert whole amino acid sequence into vector pv.to_vecs("ATATQSQSMTEEL") # convert multi-sequence FASTA file to a numpy array of protvec vectors (axis 0 = sample axis) # seqty

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