customSeqDB:用于帮助从开源数据库创建特定于分类群的RDNA序列数据库的函数-源码

上传者: 42122306 | 上传时间: 2021-08-24 15:38:06 | 文件大小: 59KB | 文件类型: ZIP
R
customSeqDB customSeqDB的目标是帮助从开源数据库(如NCBI和ENA)中创建自定义序列数据库。 函数允许在其API上搜索和获取记录,并解析这些记录以获取相关信息。 它还可以创建分类法SQLite文件,以允许获取用于创建自定义数据库的记录的分类法信息。 安装 开发版本可以通过以下方式从安装: # install.packages("devtools") devtools :: install_github( " salix-d/customSeqDB " ) 例子 从NCBI获取序列详细信息 这将获得NCBI核苷酸数据库中与这些分类单元和基因匹配的所有记录的摘要,这些分类单元和基因在“标题”字段中具有单词“ complete”,但在“ keyword”字段中没有“ UNVERIFIED”。 该查询不区分大小写。 有关可用字段及其名称,请参见: : 然后,如果需

文件下载

资源详情

[{"title":"( 32 个子文件 59KB ) customSeqDB:用于帮助从开源数据库创建特定于分类群的RDNA序列数据库的函数-源码","children":[{"title":"customSeqDB-master","children":[{"title":"customSeqDB.Rproj <span style='color:#111;'> 396B </span>","children":null,"spread":false},{"title":"README.Rmd <span style='color:#111;'> 1.81KB </span>","children":null,"spread":false},{"title":"man","children":[{"title":"parse_INSDxml.Rd <span style='color:#111;'> 1.69KB </span>","children":null,"spread":false},{"title":"parse_EMBLxml.Rd <span style='color:#111;'> 1.68KB </span>","children":null,"spread":false},{"title":"get_taxonomy.Rd <span style='color:#111;'> 1016B </span>","children":null,"spread":false},{"title":"write_fasta.Rd <span style='color:#111;'> 1.06KB </span>","children":null,"spread":false},{"title":"get_ncbiDetails.Rd <span style='color:#111;'> 2.58KB </span>","children":null,"spread":false},{"title":"get_enaTaxIds.Rd <span style='color:#111;'> 986B </span>","children":null,"spread":false},{"title":"mk_taxonomy.table.Rd <span style='color:#111;'> 1.65KB </span>","children":null,"spread":false},{"title":"save_records.Rd <span style='color:#111;'> 1.03KB </span>","children":null,"spread":false},{"title":"get_namesNodes.Rd <span style='color:#111;'> 693B </span>","children":null,"spread":false},{"title":"mk_tax.dmp.Rd <span style='color:#111;'> 810B </span>","children":null,"spread":false},{"title":"write_parsed2csv.Rd <span style='color:#111;'> 1.05KB </span>","children":null,"spread":false},{"title":"get_ncbiAcc.Rd <span style='color:#111;'> 1.93KB </span>","children":null,"spread":false},{"title":"get_ncbiFasta.Rd <span style='color:#111;'> 2.28KB </span>","children":null,"spread":false},{"title":"get_enaDetails.Rd <span style='color:#111;'> 2.11KB </span>","children":null,"spread":false},{"title":"fetch_enaSeq.Rd <span style='color:#111;'> 1.77KB </span>","children":null,"spread":false},{"title":"fetch_ncbiSeq.Rd <span style='color:#111;'> 1.82KB </span>","children":null,"spread":false},{"title":"parse_flatFile.Rd <span style='color:#111;'> 1.70KB </span>","children":null,"spread":false}],"spread":false},{"title":"NAMESPACE <span style='color:#111;'> 380B </span>","children":null,"spread":false},{"title":".Rbuildignore <span style='color:#111;'> 56B </span>","children":null,"spread":false},{"title":"LICENSE.md <span style='color:#111;'> 34.07KB </span>","children":null,"spread":false},{"title":".gitignore <span style='color:#111;'> 40B </span>","children":null,"spread":false},{"title":"R","children":[{"title":"Example4mites.Rmd <span style='color:#111;'> 19.57KB </span>","children":null,"spread":false},{"title":"parsing-records.R <span style='color:#111;'> 14.52KB </span>","children":null,"spread":false},{"title":"ncbi-db.R <span style='color:#111;'> 14.35KB </span>","children":null,"spread":false},{"title":"ncbi-sqlite.R <span style='color:#111;'> 9.57KB </span>","children":null,"spread":false},{"title":"ena-db.R <span style='color:#111;'> 6.85KB </span>","children":null,"spread":false},{"title":"savingFiles.R <span style='color:#111;'> 5.13KB </span>","children":null,"spread":false},{"title":"Example_ncbi-db.Rmd <span style='color:#111;'> 17.93KB </span>","children":null,"spread":false}],"spread":true},{"title":"DESCRIPTION <span style='color:#111;'> 873B </span>","children":null,"spread":false},{"title":"README.md <span style='color:#111;'> 2.54KB </span>","children":null,"spread":false}],"spread":true}],"spread":true}]

评论信息

免责申明

【只为小站】的资源来自网友分享,仅供学习研究,请务必在下载后24小时内给予删除,不得用于其他任何用途,否则后果自负。基于互联网的特殊性,【只为小站】 无法对用户传输的作品、信息、内容的权属或合法性、合规性、真实性、科学性、完整权、有效性等进行实质审查;无论 【只为小站】 经营者是否已进行审查,用户均应自行承担因其传输的作品、信息、内容而可能或已经产生的侵权或权属纠纷等法律责任。
本站所有资源不代表本站的观点或立场,基于网友分享,根据中国法律《信息网络传播权保护条例》第二十二条之规定,若资源存在侵权或相关问题请联系本站客服人员,zhiweidada#qq.com,请把#换成@,本站将给予最大的支持与配合,做到及时反馈和处理。关于更多版权及免责申明参见 版权及免责申明