iHam:可视化基因家族进化史的小部件-源码

上传者: 42117224 | 上传时间: 2021-05-07 13:03:22 | 文件大小: 816KB | 文件类型: ZIP
艾哈姆 iHam(“交互式HOG分析方法”)是基于的交互式javascript工具,用于可视化特定基因家族(HOG)的进化历史。 查看器由两个面板组成:一个物种树,允许用户选择一个节点来关注特定的生物分类范围;一个矩阵,根据其在物种(行)和直系同源组(列)中的成员来组织现有基因。 )。 以树为导向的HOG矩阵表示法有助于:(i)描绘给定分类范围内的直系同源基团,(ii)识别物种树中的重复和丢失事件,(iii)评估重复和丢失对基因库的累积影响,并(iv)识别基因组组装,注释或拼写推理中的潜在错误(例如,如果损失集中在末端分支上-表明基因组不完整,或者HOG内的物种覆盖范围难以置信)。 用户可以用不同的方式自定义视图。 他们可以根据蛋白质长度或GC含量为基因着色。 可以掩盖低置信度的HOG。 无关的物种进化枝可能会崩溃。 iHam是可重用的Web小部件,可以轻松地嵌入到网站中,例如,它用于在

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