sfsGBS:带有 GBS 数据的 SFS-源码

上传者: 42104366 | 上传时间: 2021-07-21 12:10:17 | 文件大小: 69.82MB | 文件类型: ZIP
R
使用 Tim 的估算 GBS 玉米数据折叠站点频谱 从 PANZEA 获取数据 wget http://www.panzea.org/dynamic/derivative_data/genotypes/AmesUSInbreds_AllZeaGBSv1.0_imputed-130508.zip 使用 TASSEL 将 hmp.txt.gz 数据重新格式化为按染色体 plink 格式: for file in *.gz do echo "$file: " $(run_pipeline.pl -Xmx15g -fork1 -h $file -export -exportType Plink -runfork1) done 合并 plink 文件以制作一个文件 - 而不是 10 个染色体文件: plink --file AmesUSInbreds_AllZeaGBSv1

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