prettyClusters:基因簇的注释,分析和图解

上传者: 42099906 | 上传时间: 2022-05-20 23:16:00 | 文件大小: 4.63MB | 文件类型: ZIP
R
prettyClusters 一套工具可以分析微生物基因组中的基因组邻域,并对其进行非隐藏的友好发布图。 重要的提示 这是一项尚在进行中的工作,我是一名生物化学家,正在做可怕的事情来编写代码。 会有错误。 我会尽力解决这些问题; 如果您想出一个解决方案,很高兴尝试将其合并! 为什么? 我花了大量时间处理细菌基因簇。 我想要某种可以做到的工具: 将基因簇的图导出为适合图布局的矢量(不是位图!)文件。 以相同的相对比例导出具有多个基因簇的图。 从JGI的导入基因元数据,该具有许多基因组,元基因组等,而这些基因组,元基因组等等在NCBI的NR数据库(和UniProt)中是不存在的,或者在NCBI / WGS之类的数据库中存在但注释不清。 有用地处理假设的蛋白质和预测的蛋白质(例如,通过识别经常出现在目标基因组邻域中的新的假设蛋白质组)。 使用通过生成的序列相似性网络集成到工作流中。

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