下采样matlab代码-ara_tools:关于Allen参考图集的小鼠大脑STP数据分析

上传者: 38653040 | 上传时间: 2022-10-23 22:00:11 | 文件大小: 119KB | 文件类型: ZIP
下采样matlab代码ARA工具 它有什么作用? 这是MATLAB函数的集合,用于处理鼠标全脑成像数据和相关的“稀疏”点数据,例如细胞位置,跟踪的神经突树或批量注入的跟踪投影。 该软件包提供了将这些稀疏数据与艾伦参考地图集(ARA)相关联的功能: 将全分辨率大脑体积下采样到ARA体素大小。 将稀疏的相关数据降采样为ARA体素大小,然后将这些数据导出到一个csv文件中。 将样本大脑和稀疏数据注册到ARA:样本-> ARA和ARA->样本转换。 确定与每个稀疏点相关的ARA脑区域。 从参考地图集中提取可用于绘制的区域轮廓。 是给谁用的? ARA Tools的编写考虑了我们的数据。 在某些地方,可能期望使用来缝制原始数据,因此您可能需要调整我们的代码以适合自己的工作。 安装 在Git客户端(如或)中克隆存储库。 您将需要下面列出的部分或全部依赖项。 您需要哪些取决于您在做什么。 例如,您不需要注册资料即可绘制单元格。 您将需要一份MHD格式的Allen Atlas和模板大脑的副本。 其中一个包含在上。 将code目录的内容添加到您的MATLAB路径中。 正确设置ara_tools(请参阅参考

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