matlab逐步回归代码-treemap:TreeMap:eQTL变体精细映射的结构化方法

上传者: 38518668 | 上传时间: 2022-04-28 15:52:02 | 文件大小: 1.13GB | 文件类型: ZIP
matlab初步回归代码TreeMap-eQTL变体的精细映射的结构化方法 TreeMap在cis-eQTL中优先考虑推定的因果变异,从而说明了一个位点的多位点效应和遗传连锁。 它采用3层嵌套设计来删除无信息的变体,并逐步减少信息性变体之间的冗余。 在外层,树引导的惩罚回归选择LD中的变体组或与转录变化相关的单个变体。 在中间层,逐步条件分析会迭代每个LD块内的变体组合,以识别特定于块的最佳解决方案。 在内部层,将从先前的层中选择的变量进行汇总,然后通过贝叶斯多变量分析以得出全局最优解。 TreeMap支持集群环境中的并行处理。 安装。 ## if you have not installed devtools, please do install.packages("devtools"); ## if on Mac Download "Command Line Tools for Xcode 12" from https://developer.apple.com/download/more/ before next step ## then install treemap devt

文件下载

资源详情

[{"title":"( 49 个子文件 1.13GB ) matlab逐步回归代码-treemap:TreeMap:eQTL变体精细映射的结构化方法","children":[{"title":"treemap-master","children":[{"title":"NAMESPACE <span style='color:#111;'> 552B </span>","children":null,"spread":false},{"title":"DESCRIPTION <span style='color:#111;'> 488B </span>","children":null,"spread":false},{"title":"simulation.for.paper","children":[{"title":"readme_simulation.txt <span style='color:#111;'> 375B </span>","children":null,"spread":false},{"title":"2_causal_linked","children":[{"title":"0.1_0.2.tar.gz <span style='color:#111;'> 47.15MB </span>","children":null,"spread":false},{"title":"0.3_0.4.tar.gz <span style='color:#111;'> 45.76MB </span>","children":null,"spread":false},{"title":"0.5_0.6.tar.gz <span style='color:#111;'> 47.16MB </span>","children":null,"spread":false},{"title":"0.9_1.tar.gz <span style='color:#111;'> 50.19MB </span>","children":null,"spread":false},{"title":"0.7_0.8.tar.gz <span style='color:#111;'> 47.21MB </span>","children":null,"spread":false},{"title":"0.8_0.9.tar.gz <span style='color:#111;'> 46.91MB </span>","children":null,"spread":false},{"title":"0.2_0.3.tar.gz <span style='color:#111;'> 42.65MB </span>","children":null,"spread":false},{"title":"0.4_0.5.tar.gz <span style='color:#111;'> 43.53MB </span>","children":null,"spread":false},{"title":"0.6_0.7.tar.gz <span style='color:#111;'> 47.30MB </span>","children":null,"spread":false}],"spread":true},{"title":"causal_independent","children":[{"title":"1_causal.tar.gz.partac <span style='color:#111;'> 9.22MB </span>","children":null,"spread":false},{"title":"4_causal.tar.gz.partac <span style='color:#111;'> 9.18MB </span>","children":null,"spread":false},{"title":"3_causal.tar.gz.partac <span style='color:#111;'> 9.19MB </span>","children":null,"spread":false},{"title":"2_causal.tar.gz.partab <span style='color:#111;'> 90.00MB </span>","children":null,"spread":false},{"title":"1_causal.tar.gz.partaa <span style='color:#111;'> 90.00MB </span>","children":null,"spread":false},{"title":"3_causal.tar.gz.partaa <span style='color:#111;'> 90.00MB </span>","children":null,"spread":false},{"title":"2_causal.tar.gz.partaa <span style='color:#111;'> 90.00MB </span>","children":null,"spread":false},{"title":"2_causal.tar.gz.partac <span style='color:#111;'> 8.82MB </span>","children":null,"spread":false},{"title":"1_causal.tar.gz.partab <span style='color:#111;'> 90.00MB </span>","children":null,"spread":false},{"title":"4_causal.tar.gz.partaa <span style='color:#111;'> 90.00MB </span>","children":null,"spread":false},{"title":"3_causal.tar.gz.partab <span style='color:#111;'> 90.00MB </span>","children":null,"spread":false},{"title":"4_causal.tar.gz.partab <span style='color:#111;'> 90.00MB </span>","children":null,"spread":false}],"spread":false}],"spread":true},{"title":"R","children":[{"title":"my.functions.post.processing.R <span style='color:#111;'> 27.26KB </span>","children":null,"spread":false},{"title":"Liu_conditional.r <span style='color:#111;'> 13.20KB </span>","children":null,"spread":false},{"title":"my.functions.lasso.R <span style='color:#111;'> 13.19KB </span>","children":null,"spread":false},{"title":"my.functions.pre.processing.R <span style='color:#111;'> 14.33KB </span>","children":null,"spread":false},{"title":"my.functions.run.R <span style='color:#111;'> 13.31KB </span>","children":null,"spread":false}],"spread":true},{"title":"examples","children":[{"title":"SMTN.causal.txt <span style='color:#111;'> 143B </span>","children":null,"spread":false},{"title":"SMTN.simulated.txt <span style='color:#111;'> 3.84MB </span>","children":null,"spread":false},{"title":"output","children":[{"title":"SMTN.comb.txt <span style='color:#111;'> 3.61KB </span>","children":null,"spread":false},{"title":"SMTN.within.RData <span style='color:#111;'> 715B </span>","children":null,"spread":false},{"title":"SMTN.feature.csv.gz <span style='color:#111;'> 4.08KB </span>","children":null,"spread":false},{"title":"SMTN.top.txt <span style='color:#111;'> 1.41KB </span>","children":null,"spread":false},{"title":"SMTN.cross.RData <span style='color:#111;'> 369B </span>","children":null,"spread":false},{"title":"SMTN.locus.txt <span style='color:#111;'> 2.13KB </span>","children":null,"spread":false},{"title":"SMTN.response.csv.gz <span style='color:#111;'> 15.91KB </span>","children":null,"spread":false},{"title":"SMTN.cond.out <span style='color:#111;'> 2.01KB </span>","children":null,"spread":false},{"title":"SMTN.treemap.out <span style='color:#111;'> 2.35KB </span>","children":null,"spread":false},{"title":"SMTN.log.txt <span style='color:#111;'> 157B </span>","children":null,"spread":false},{"title":"SMTN.geno.csv.gz <span style='color:#111;'> 329.53KB </span>","children":null,"spread":false},{"title":"SMTN.cond.log <span style='color:#111;'> 70B </span>","children":null,"spread":false},{"title":"SMTN.geno.norm.csv.gz <span style='color:#111;'> 1.31MB </span>","children":null,"spread":false},{"title":"SMTN.tree-lasso.csv <span style='color:#111;'> 41.87KB </span>","children":null,"spread":false},{"title":"SMTN.group.csv.gz <span style='color:#111;'> 13.01KB </span>","children":null,"spread":false}],"spread":false}],"spread":true},{"title":"README.md <span style='color:#111;'> 4.34KB </span>","children":null,"spread":false},{"title":"man","children":[{"title":"conditional.Rd <span style='color:#111;'> 1.53KB </span>","children":null,"spread":false},{"title":"treemap.Rd <span style='color:#111;'> 3.69KB </span>","children":null,"spread":false}],"spread":true}],"spread":true}],"spread":true}]

评论信息

免责申明

【只为小站】的资源来自网友分享,仅供学习研究,请务必在下载后24小时内给予删除,不得用于其他任何用途,否则后果自负。基于互联网的特殊性,【只为小站】 无法对用户传输的作品、信息、内容的权属或合法性、合规性、真实性、科学性、完整权、有效性等进行实质审查;无论 【只为小站】 经营者是否已进行审查,用户均应自行承担因其传输的作品、信息、内容而可能或已经产生的侵权或权属纠纷等法律责任。
本站所有资源不代表本站的观点或立场,基于网友分享,根据中国法律《信息网络传播权保护条例》第二十二条之规定,若资源存在侵权或相关问题请联系本站客服人员,zhiweidada#qq.com,请把#换成@,本站将给予最大的支持与配合,做到及时反馈和处理。关于更多版权及免责申明参见 版权及免责申明